Removes adapter sequences from sequencing reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
*.{fq,fastq,fq.gz,fastq.gz}
*.trim.fastq.gz{:bash}
The trimmed/modified fastq reads
*fastq.gz
log{:bash}
*.log{:bash}
cutadapt log file
*cutadapt.log
versions_cutadapt{:bash}
${task.process}{:bash}
:string
The name of the process
cutadapt{:bash}
The name of the tool
cutadapt --version{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
